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3.1.2.1 Sample Data Description File


            <!-- DTI data properties file-->

            <!-- do not remove the above comment line -->

            <!--***************************************************************************-->

            <!-- Path to the PROCBASE. The folder containing the data, list files, path file and bmatrix file-->

            <PROCBASE>/home/username/main_data_folder/specific_data_folder/</PROCBASE>

            <!--***************************************************************************-->

            <!-- Path to the structural filename->

            <STRUCTURAL_FILENAME>/home/username/main_data_folder/specific_data_folder/structural_image.img</STRUCTURAL_FILENAME>

            <!--***************************************************************************-->

            <!-- Path to the template filename. OPTIONAL.. If not provided, the software will look for -->

            <!-- a file with listfile name with _b0_orig_crop or _ b0_orig at the end. -->

            <!-- <TEMPLATE_FILENAME></TEMPLATE_FILENAME>

            <!--***************************************************************************-->

            <!-- Root name of the list file. It has to be in PROCBASE folder

            <list_root_filename>sample.list</list_root_filename>

            <!--***************************************************************************-->

            <!--A tag for specifying if the data is brain or a phantom/other type of data -->

            <!--If it's not brain data, skull stripping will be omited in various functions of the code. -->

            <!--Values are yes/no -->

            <is_brain_data>yes</is_brain_data>

            <!--***************************************************************************-->

            <!-- Name of the registration file to be used -->

            <registration_filename>sample_registration_settings.dmc</registration_filename>

            <!--***************************************************************************-->

            <!-- Upsampled images name. If automatic upsampling is used and the user wants to anonymize the data, enter a name here-->

            <!-- Not mandatory. Currently commented out to use the automatically generated name -->

            <! -- <upsample_name>upsampled_</upsample_name>

            <!--***************************************************************************-->

            <!-- B0 noise mean -->

            <B0_noise_mean>0.0</B0_noise_mean>

            <!--***************************************************************************-->

            <!-- B0 noise standard deviation -->

            <B0_noise_stdev>0.0</B0_noise_stdev>

            <!--***************************************************************************-->

            <!-- Structural noise mean -->

            <structural_noise_mean>0.0</structural_noise_mean>

            <!--***************************************************************************-->

            <!-- Structural noise standard deviation -->

            <structural_noise_stdev>0.0</structural_noise_stdev>